Fixing link in README
'Parser' link was point to NEURON instead of parser directory
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Even more docs
Temporary addition of old ParseAll.py script
More docs
Update README.md
More readmes
Parallelised ParseAll.py
Restructured ParseAll, made pylint compliant
Removing some stray usages of ChannelML
Changing ChannelML to NeuroML in notes
Merge branch 'master' of github.com:OpenSourceBrain/BlueBrainProjectShowcase
Nore info in nostes from original mod files
More to ignore
Extraction
Making into zips
Adding option to create folder for zipped versions of cell models
Adding test on nml2 version of cell with StochKv
mep file
Improvements to StochKv tests
Adding cell example with StochKv
More tests
Better StochKv tests
Much test
Work for StochKv
Regenerated channel summary
Initial deterministic version of StochKv in NML2
Updating notes in a number of files
Removing whitespace & saving as same encoding to ease comparison of StochKv.mod files
Deterministic version of mod file & script for analysing it
Original version StochKv
Adding StochKv.mod example
Updating readmes
Moving Syn example to NeuroML2 directory
Readme for SynapseExample
Moving & renaming ChannelTest directory
Adding L5 cell example & tests
L23 cell getting properly exported
Adding test to compare to NRN
Adding test on L23 cell
all channels present in L1 cell
Added inhomogeneousParameter element on apical & basal segmentGroups
Now all channels except Ih included & close match NRN->NML2
Passing test with more channels present
Improved export of Ca_Dynamics
Regenerated with latest libNeuroML
Updating scripts to test templates.json
Creating channel summary
Replacing Ca.channel.nml with Ca_HVA.channel.nml
Generating test cells from info in templates.json
Improved export to ManyCells
Adding L23 cell
Adding a number of channels to nml2 cell to test
Stricter test on nml2->nrn version
Util for info on cells
Testing passive version of orig cell & NML->NRN version
Adding generation of a network with test input stimulus to compare to original NRN version
Testing the NEURON code generated from the NML2 files
Adding a test run of the L1 cell using OMV
Initial test on original NEURON model
More info in exported file
Separating net and cell nml files
Improved export of groups (somatic/apical/basal) required for channel distribution
Adding example cell and version (not yet validated) exported to NeuromL2
Parser for zip files from nmc
Correct location mep file
Adding extra engines in .travis.yml
Adding NEURON versions of channels as used in NMC
Adding NeuroML versions of BBP NMC channel files
Adding more examples of channels
Adding more examples of converted channels
Using NML2ChannelAnalysis.py in pyNeuroML now
Adding more tests
Update .travis.yml
Adding omv test
Retested with latest libNeuroML & updated appropriately
Adding unused ca_conc
Adding a settable Ca concentration on the clamped/ramp "cell" used for testing channels
Updating to geenrate preferred format for nml2 channels
Adding many more command line options when running NML2ChannelAnalyse.py
usage: NML2ChannelAnalyse.py [-h] [-v] [-minV ] [-maxV ] [-temperature ] [-duration ] [-clampDelay ]...
Some general modifications & tidying up of generated lems analysis scripts
Work towards helping out with https://github.com/openworm/OpenWorm/issues/169
Minor tweak to channel analysis template
Minor change to naming of files for activation variable traces
Improved use of script when run from another directory
Minor change to template for generated lems analysis script
Update NML2ChannelAnalyse.py
Another test
Testing one more file
Defaulting to 6.3degC, as that's used in Neuron & adding info on temp to figure titles
Restructuring