fix activation var plotting
add sample session
More compact
Modified ManyCells
Adding L23 interneuron: cNAC187_L23_NBC_9d37c4b1f8
Add tests for this cell Add tests of all cells on NetPyNE
Merge pull request #8 from JustasB/patch-1
Update ChannelpediaToNeuroML2.py
t variable was missing correct dimension
Adding "standard" NeuroML group names
Regenerated with some extra property info in cells
Downloaded latest zips from NMC & extracted here
Regenerated cells with latest lib/pyNeuroML
Create _osb.yml
Update README.md
Retested test_all.py & regenerated
Regenerated some chan analysis
Generated channel info for channelpedia channels
Adjusting spike times to comply with those generated by latest version of OMV Times are calculated now as the time point after the traces passes threshold (aot just before)
Updated plots
Back to 10 cells
Just 5 in example
More cells
Example network
Merge pull request #4 from wvangeit/master
Added requirements to README.md of parser directory
Merge branch 'master' of github.com:wvangeit/BlueBrainProjectShowcase
Made the parallelisation of the parser a commandline option Added more instructions to the README
Merge pull request #3 from OpenSourceBrain/wvangeit-patch-1
Fixing link in README
Fixed list in markdown of README
Added requirements sections to README
'Parser' link was point to NEURON instead of parser directory
jpg
Even more docs
Temporary addition of old ParseAll.py script
More docs
More readmes
Parallelised ParseAll.py
Restructured ParseAll, made pylint compliant
Removing some stray usages of ChannelML
Changing ChannelML to NeuroML in notes
Merge branch 'master' of github.com:OpenSourceBrain/BlueBrainProjectShowcase
Nore info in nostes from original mod files
More to ignore
Extraction
Making into zips
Adding option to create folder for zipped versions of cell models
Adding test on nml2 version of cell with StochKv
mep file
Improvements to StochKv tests
Adding cell example with StochKv
More tests
Better StochKv tests
Much test
Work for StochKv
Regenerated channel summary
Initial deterministic version of StochKv in NML2
Updating notes in a number of files
Removing whitespace & saving as same encoding to ease comparison of StochKv.mod files
Deterministic version of mod file & script for analysing it
Original version StochKv
Adding StochKv.mod example
Updating readmes
Moving Syn example to NeuroML2 directory
Readme for SynapseExample
Moving & renaming ChannelTest directory
Adding L5 cell example & tests
L23 cell getting properly exported
Adding test to compare to NRN
Adding test on L23 cell
all channels present in L1 cell
Added inhomogeneousParameter element on apical & basal segmentGroups
Now all channels except Ih included & close match NRN->NML2
Passing test with more channels present
Improved export of Ca_Dynamics
Regenerated with latest libNeuroML
Updating scripts to test templates.json
Creating channel summary
Replacing Ca.channel.nml with Ca_HVA.channel.nml
Generating test cells from info in templates.json
Improved export to ManyCells
Adding L23 cell
Adding a number of channels to nml2 cell to test
Stricter test on nml2->nrn version
Util for info on cells
Testing passive version of orig cell & NML->NRN version
Adding generation of a network with test input stimulus to compare to original NRN version
Testing the NEURON code generated from the NML2 files
Adding a test run of the L1 cell using OMV
Initial test on original NEURON model
More info in exported file
Separating net and cell nml files
Improved export of groups (somatic/apical/basal) required for channel distribution
Adding example cell and version (not yet validated) exported to NeuromL2
Parser for zip files from nmc
Correct location mep file
Adding extra engines in .travis.yml
Adding NEURON versions of channels as used in NMC