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# Date Author Comment
e202c2f5 14 May 2024 21:03 Padraig Gleeson (admin)

Merge pull request #16 from OpenSourceBrain/development

More adding of spikeThresh
b6bc71b6 14 May 2024 20:03 Padraig Gleeson (admin)

More adding of spikeThresh
ead235a8 14 May 2024 19:46 Padraig Gleeson (admin)

Merge pull request #15 from OpenSourceBrain/development

Adding for future nml validity
406fc17e 14 May 2024 19:24 Padraig Gleeson (admin)

Looser eden test for macos
049dc1bb 14 May 2024 19:19 Padraig Gleeson (admin)

Manually edited to add spikeThresh
ba4f87a3 14 May 2024 19:12 Padraig Gleeson (admin)

Remove line failing on macos
14f451eb 14 May 2024 19:10 Padraig Gleeson (admin)

Regenerated main cells with

d78c011b 14 May 2024 18:59 Padraig Gleeson (admin)

Regenerated
cea18f14 14 May 2024 18:29 Padraig Gleeson (admin)

Test on mac too...
700af396 14 May 2024 16:07 Padraig Gleeson (admin)

Update GHA versions
2413bbad 25 Sep 2023 22:45 Padraig Gleeson (admin)

Update omv-ci.yml
4bd62519 11 Aug 2023 18:41 Padraig Gleeson (admin)

Add more tests
a896ccaa 11 Aug 2023 17:56 Padraig Gleeson (admin)

Printing report files, add 1 more netpyne test
4a4398a6 11 Aug 2023 17:36 Padraig Gleeson (admin)

Reduce timestep of l23nbc; test with eden
f09c989d 28 Mar 2023 21:08 Padraig Gleeson (admin)

Merge pull request #13 from OpenSourceBrain/development

Update spike times for nrn 8.1
5420175c 28 Mar 2023 19:58 Padraig Gleeson

Test with master of omv repo
3506cc28 24 Mar 2023 20:25 Padraig Gleeson

More updates for nrn8.1
1b3909dd 24 Mar 2023 20:04 Padraig Gleeson

Update spike times for nrn 8.1
e944c17e 24 Mar 2023 19:42 Padraig Gleeson

Test with osb-model-validation@test_pynn0101
7b79e24b 24 Mar 2023 19:39 Padraig Gleeson

pip install 'numpy<=1.23.0'
9f405f1c 24 Mar 2023 17:38 Padraig Gleeson

Install pyelectro
b8510861 24 Mar 2023 15:49 Padraig Gleeson (admin)

Use pip install 'numpy<=1.23.0'
1debebd3 09 Aug 2022 18:46 Padraig Gleeson (admin)

Regenerated nml files
8cf70a69 09 Aug 2022 15:57 Padraig Gleeson (admin)

Print info gen files
2cd8aa77 30 Nov 2021 16:06 Padraig Gleeson (admin)

Update README.md
2234ce47 30 Nov 2021 16:00 Padraig Gleeson (admin)

Update ci scripts
fa9535cb 30 Nov 2021 15:58 Padraig Gleeson (admin)

Create non_omv.yml
dc16cf8a 30 Nov 2021 15:52 Padraig Gleeson (admin)

Create omv-ci.yml
7e751431 09 Jun 2021 20:47 Padraig Gleeson (admin)

Update README.md
db25698a 10 Mar 2021 00:14 Padraig Gleeson (admin)

Update .travis.yml
d8453bd2 09 Mar 2021 23:35 Padraig Gleeson (admin)

Update README.md
d24514b7 09 Mar 2021 16:45 Padraig Gleeson (admin)

Update .travis.yml
86675a0d 25 Feb 2021 16:27 Padraig Gleeson (admin)

Update .travis.yml
ade9fb9a 25 Feb 2021 15:17 Padraig Gleeson (admin)

Change times l1 nrn for neuron 7.7
ed8e5b6d 29 Jul 2020 23:08 Padraig Gleeson (admin)

More python 3 fixes
e7a64063 29 Jul 2020 22:44 Padraig Gleeson (admin)

More py3 fixes
c6bef25f 29 Jul 2020 22:17 Padraig Gleeson (admin)

Change for py3
f88b9669 29 Jul 2020 21:45 Padraig Gleeson (admin)

Update .travis.yml
39566079 24 Jun 2019 16:04 Padraig Gleeson (admin)

Correct dir
f4e4e151 24 Jun 2019 15:40 Padraig Gleeson (admin)

Compile mods
cb68c7ab 24 Jun 2019 15:20 Padraig Gleeson (admin)

jinja2 in travis
53aeb320 20 Jun 2019 23:18 Padraig Gleeson (admin)

Merge branch 'update_nrn'

  • update_nrn: Regenerated; testing parse
a1a30ab2 20 Jun 2019 23:17 Padraig Gleeson (admin)

Regenerated; testing parse
99fe7ebd 15 May 2019 23:43 Padraig Gleeson (admin)

Merge pull request #11 from OpenSourceBrain/update_nrn

Update tests to better check on Nrn 7.5&7.6
5569330b 15 May 2019 23:28 Padraig Gleeson (admin)

Disable nrn7.4
e77e7c77 15 May 2019 22:10 Padraig Gleeson (admin)

Changed recording step in original NRN 0.1->0.025

  • to ensure consistency across NRN versions
  • to better enable comparison with NeuroML
0353640c 23 Apr 2019 22:26 Padraig Gleeson (admin)

Update .travis.yml
6d4fd12a 15 Jan 2019 11:20 Padraig Gleeson (admin)

L5 cell test times out for netpyne...
1d07d163 15 Jan 2019 10:59 Padraig Gleeson (admin)

Run tests on Netpyne
66ef0ed6 08 Jan 2019 13:06 Padraig Gleeson (admin)

Licence info
721a52c2 17 Oct 2018 16:19 Padraig Gleeson (admin)

Adding initial analysis of cells
65f13fbc 17 Jan 2018 13:36 Matt Earnshaw

remove parser-breaking break from _osb.yml
a1c5b08d 08 Jan 2018 12:19 Padraig Gleeson (admin)

More example nets
cbb46cde 21 Dec 2017 10:49 Padraig Gleeson (admin)

Merge branch 'master' of github.com:OpenSourceBrain/BlueBrainProjectShowcase

  • 'master' of github.com:OpenSourceBrain/BlueBrainProjectShowcase: Update README.md
ff2c4129 21 Dec 2017 10:49 Padraig Gleeson (admin)

Regenerated morphs
e9171ac3 15 Dec 2017 16:53 Padraig Gleeson (admin)

Update README.md
d406cb0e 15 Dec 2017 16:15 Padraig Gleeson (admin)

Add 1% h5 network
c025a3b1 15 Dec 2017 16:12 Padraig Gleeson (admin)

Add info on conversion to nml2 & full scale model
61945ce2 07 Dec 2017 16:20 Padraig Gleeson (admin)

10% full scale network...
6b7b3802 01 Dec 2017 15:46 Padraig Gleeson (admin)

Test files
ccfa4e55 01 Dec 2017 15:38 Padraig Gleeson (admin)

Test export
5c2f268a 30 Aug 2017 13:19 Padraig Gleeson (admin)

Update bbp net
434dbb95 30 Aug 2017 13:15 Padraig Gleeson (admin)

Test network from connectome data
abe428ca 30 Aug 2017 09:25 Padraig Gleeson (admin)

Ignoring
f43d10c6 03 Aug 2017 12:17 Padraig Gleeson (admin)

More compact
3d516f01 11 Jul 2017 10:37 Padraig Gleeson (admin)

Modified ManyCells
66b69e77 30 Jun 2017 13:04 Padraig Gleeson (admin)

Adding L23 interneuron: cNAC187_L23_NBC_9d37c4b1f8

Add tests for this cell
Add tests of all cells on NetPyNE
46f57cd2 09 May 2017 15:29 Padraig Gleeson (admin)

Merge pull request #8 from JustasB/patch-1

Update ChannelpediaToNeuroML2.py
3ca9bfb6 01 May 2017 21:59 Justas Birgiolas

Update ChannelpediaToNeuroML2.py

t variable was missing correct dimension
bc675218 01 Feb 2017 14:52 Padraig Gleeson (admin)

Adding "standard" NeuroML group names
427de74b 01 Feb 2017 14:01 Padraig Gleeson (admin)

Regenerated with some extra property info in cells
571a60b8 01 Feb 2017 13:46 Padraig Gleeson (admin)

Downloaded latest zips from NMC & extracted here
7a568ca8 01 Feb 2017 13:11 Padraig Gleeson (admin)

Regenerated cells with latest lib/pyNeuroML
010d8617 14 Sep 2016 11:42 Padraig Gleeson (admin)

Create _osb.yml
1059d674 27 Jul 2016 12:58 Padraig Gleeson (admin)

Update README.md
cc1be78d 27 Jul 2016 12:54 Padraig Gleeson (admin)

Retested test_all.py & regenerated
1fd742e7 27 Jul 2016 12:34 Padraig Gleeson (admin)

Regenerated some chan analysis
e15a535a 21 Mar 2016 14:37 Padraig Gleeson (admin)

Update README.md
9d228821 11 Mar 2016 19:06 Padraig Gleeson (admin)

Generated channel info for channelpedia channels
8903e275 24 Nov 2015 15:03 Padraig Gleeson (admin)

Adjusting spike times to comply with those generated by latest version of OMV
Times are calculated now as the time point after the traces passes threshold (aot just before)
f3249379 03 Nov 2015 16:43 Padraig Gleeson (admin)

Updated plots
702dbcaa 12 Oct 2015 16:12 Padraig Gleeson (admin)

Back to 10 cells
77c4465a 12 Oct 2015 14:11 Padraig Gleeson (admin)

Just 5 in example
b9409fab 12 Oct 2015 13:41 Padraig Gleeson (admin)

More cells
5dae1b7a 12 Oct 2015 13:23 Padraig Gleeson (admin)

Example network
09e48d57 09 Oct 2015 16:49 Padraig Gleeson (admin)

Update README.md
0ab6c9d6 09 Oct 2015 16:46 Padraig Gleeson (admin)

Update README.md
451c664d 09 Oct 2015 16:05 Padraig Gleeson (admin)

Update README.md
b571211a 09 Oct 2015 16:02 Padraig Gleeson (admin)

Update README.md
126bab27 09 Oct 2015 15:56 Padraig Gleeson (admin)

Update README.md
80b48d95 09 Oct 2015 15:54 Padraig Gleeson (admin)

Merge pull request #4 from wvangeit/master

Added requirements to README.md of parser directory
51ab6db2 09 Oct 2015 14:12 Werner Van Geit

Merge branch 'master' of github.com:wvangeit/BlueBrainProjectShowcase
7f8376d4 09 Oct 2015 14:10 Werner Van Geit

Made the parallelisation of the parser a commandline option
Added more instructions to the README
0264aa1b 09 Oct 2015 13:36 Padraig Gleeson (admin)

Merge pull request #3 from OpenSourceBrain/wvangeit-patch-1

Fixing link in README
851861d8 09 Oct 2015 13:20 Werner Van Geit

Fixed list in markdown of README
0d0aab47 09 Oct 2015 13:17 Werner Van Geit

Added requirements sections to README
c11368ed 09 Oct 2015 12:51 Werner Van Geit

Fixing link in README

'Parser' link was point to NEURON instead of parser directory
0797e7dd 08 Oct 2015 18:37 Padraig Gleeson (admin)

jpg
7e89125b 08 Oct 2015 18:36 Padraig Gleeson (admin)

Even more docs
53a7921d 08 Oct 2015 18:06 Padraig Gleeson (admin)

Temporary addition of old ParseAll.py script