Adex2pop_1comp_test4 example of three cells does not run
added medium size network based on tutorial 5 except; synapse type was changed to conductance-based
deleted a redundant file
README is changed in the VERTEX folder
existing examples are modified, some where deleted, new methods were added, one compartment Adex cell is exported to LEMS, good match between LEMS and VERTEX
new scripts and files
Merge pull request #10 from OpenSourceBrain/pg_tests
Using filesep to make operating system independent paths
Ignoring geenrated directories
changed paths, also notice that new methods require to specify the directory of VERTEX_Adex_LEMS.xml
testing 2 cell network export to LEMS- VERTEX results diverge from LEMS results. A potential reason - lEMS does not implement synaptic activity.See two different xml files in the test_LEMS subfolder; results produced in LEMS are the same suggesting that only current step inputs drive individual cells
changes to paths in new scripts
new methods and conversion of VERTEX Adex one compartment cells to LEMS
testing one cell one compartment Adex model
deleted test network file and added one compartment cell.nml and network containing these cells
checking sufficiency of elements and attributes in current cell. nml files for visualization of the networks containing those cells
checking test network file with g_exp
deleted file
changes to cellpositions_cellconnectivity.m and corresponding changes to Adex2pop_2comp net nml
renamed working Adex2pop_2comp model script
one conn
correct nums
1 conn
no conns
pop
change name pop
corect syn
rem conns
Fraction alongs
poplist
add population list
test adding segment groups & biophys
Test example
changes to synapse_parameters_export.m
added subfolder for LEMS scripts
added export of synapse parameters and new nml and svg files
test multi-compartment cell from VERTEX tutorial1
testing preSegmentId attribute
test synapse.nml
new methods cell_morphology.m and compartments_parameters_export.m and new ../cell.nml files are generated
Adex2pop_1comp_model.net.nml was generated
small changes
changes to existing methods and new export method to eneuroml
slight changes to indexing and started developing code for the export to nml
small change to Adex2populations.....
small changes to existing files and new export method under development
changes to cellconnectivity.m and added new method cellconnectivity_tags.m
added method cellconnectivity.m
small changes and a newly added method cellconnectivity.m
new cellpositions.m and cellpositions_tags.m added
added cellpositions command to the Adex2populations_2compartment_model.m
early version of cellpositions.m
removed hardcoded path in Adex2populations.. models
the same as Adex2populations_2compartment_model.m except that 1 compartment
added simple network model consisting of 2 populations, each with 5 cells. Eachcell has two compartments and follow adex dynamics
VERTEX folder
Merge branch 'master' of https://github.com/OpenSourceBrain/VERTEXShowcase
'deletion'
added another file
deletion
added the first m file
Update README.md
New folder
Neuroml2 folder
Initial commit