Update omv-ci.yml
Create omv-ci.yml
Update README.md
further developments in synapse import
added scaling of basic units so that it is compatible with VERTEX
modified neuroModel name handling
further developed templates for the import to VERTEX
changes in lems_import_to_VERTEX.m
changed README
changing naming
changing README
modifying README
started modifying README
moving files
moving methods to Utils
moving files to different folders
changed projection ids
furhter developments of the velocity template for VERTEX
moving files to Utils
added Utils folder
results of simulations of FitzHughNagumoCell in LEMS and in VERTEX after cell model import
added import example with PointNeuronModel_FitzHughNagumo.m
annotation to PointNeuronModel_fitzhughnagumocell.m
added manually created PointNeuronModel_fitzhughnagumocell.m
modified lems_import_to_VERTEX.m
modified VERTEXcell_vs_LEMScell.m
updated import_to_VERTEX_test1.m
further developed methods for import to VERTEX
further developed lems_to_VERTEX method and added a simple testfile import_to_VERTEX_test1.m
further developed lems_import_to_VERTEX.m
further developed import of step current inputs to VERTEX
started adding import for step current inputs
separated import methods for lems and neuroml files
continuing to develop methods for the import of network structure and model parameters from LEMS to VERTEX
resolved a bug in the import method
developing methods for the import of network structure into VERTEX
developing methods for the import of network structure to VERTEX
started developing methods for the import of network structure to VERTEX
added test2 for pointIzhikevichCell_stepI with two cells and one synaptic connection
updated README in the VERTEX subfolder and testing synaptic connectivity between Izhikevich cells
added a new cell model for the VERTEX based on the LEMS definition of Izhikevich Cell and a new method that transforms Izhikevich model instantiation to the LEMS
added the network of 1000 cells
put images into one folder
added Adex three population model with 21 cells and a new method get_cells_to_display.m for convenient conversion of IDs of the cells for which membrane potentials have to be recorded
Adding scripts to test validity of NeuroML on Travis-CI
Adding image
Adex2pop_1comp_test4 example of three cells does not run
added medium size network based on tutorial 5 except; synapse type was changed to conductance-based
deleted a redundant file
README is changed in the VERTEX folder
existing examples are modified, some where deleted, new methods were added, one compartment Adex cell is exported to LEMS, good match between LEMS and VERTEX
new scripts and files
Merge pull request #10 from OpenSourceBrain/pg_tests
Using filesep to make operating system independent paths
Ignoring geenrated directories
changed paths, also notice that new methods require to specify the directory of VERTEX_Adex_LEMS.xml
testing 2 cell network export to LEMS- VERTEX results diverge from LEMS results. A potential reason - lEMS does not implement synaptic activity.See two different xml files in the test_LEMS subfolder; results produced in LEMS are the same suggesting that only current step inputs drive individual cells
changes to paths in new scripts
new methods and conversion of VERTEX Adex one compartment cells to LEMS
testing one cell one compartment Adex model
deleted test network file and added one compartment cell.nml and network containing these cells
checking sufficiency of elements and attributes in current cell. nml files for visualization of the networks containing those cells
checking test network file with g_exp
deleted file
changes to cellpositions_cellconnectivity.m and corresponding changes to Adex2pop_2comp net nml
renamed working Adex2pop_2comp model script
one conn
correct nums
1 conn
no conns
pop
change name pop
corect syn
rem conns
Fraction alongs
poplist
add population list
test adding segment groups & biophys
Test example
changes to synapse_parameters_export.m
added subfolder for LEMS scripts
added export of synapse parameters and new nml and svg files
test multi-compartment cell from VERTEX tutorial1
testing preSegmentId attribute